[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 136 items for (author: ruan & j)

EMDB-17740:
Cryo-EM structure of NR5A2-nucleosome complex SHL+5.5
Method: single particle / : Kobayashi W, Sappler A, Bollschweiler D, Kummecke M, Basquin J, Arslantas E, Ruangroengkulrith S, Hornberger R, Duderstadt K, Tachibana K

EMDB-17741:
Cryo-EM structure of the nucleosome containing Nr5a2 motif at SHL+5.5
Method: single particle / : Kobayashi W, Sappler A, Bollschweiler D, Kummecke M, Basquin J, Arslantas E, Ruangroengkulrith S, Hornberger R, Duderstadt K, Tachibana K

PDB-8pki:
Cryo-EM structure of NR5A2-nucleosome complex SHL+5.5
Method: single particle / : Kobayashi W, Sappler A, Bollschweiler D, Kummecke M, Basquin J, Arslantas E, Ruangroengkulrith S, Hornberger R, Duderstadt K, Tachibana K

PDB-8pkj:
Cryo-EM structure of the nucleosome containing Nr5a2 motif at SHL+5.5
Method: single particle / : Kobayashi W, Sappler A, Bollschweiler D, Kummecke M, Basquin J, Arslantas E, Ruangroengkulrith S, Hornberger R, Duderstadt K, Tachibana K

EMDB-29794:
SARS-CoV-2 spike/Nb2 complex with 1 RBD up (local refinement at 5.6 A)
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-29795:
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-29796:
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-29797:
SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-8g72:
SARS-CoV-2 spike/Nb2 complex with 1 RBD up (local refinement at 5.6 A)
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-8g73:
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-8g74:
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-8g75:
SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-35782:
Cryo-EM structure of unprotonated LHCII in detergent solution at high pH value
Method: single particle / : Ruan MX, Ding W

EMDB-35783:
Cryo-EM structure of protonated LHCII in detergent solution at low pH value
Method: single particle / : Ruan MX, Ding W

EMDB-35784:
Cryo-EM structure of unprotonated LHCII in detergent solution at low pH value
Method: single particle / : Ruan MX, Ding W

EMDB-35785:
Cryo-EM structure of unprotonated LHCII nanodisc at high pH value
Method: single particle / : Ruan MX, Ding W

EMDB-35786:
Cryo-EM structure of protonated LHCII nanodisc at low pH value
Method: single particle / : Ruan MX, Ding W

EMDB-35787:
Cryo-EM structure of unprotonated LHCII nanodisc at low pH value
Method: single particle / : Ruan MX, Ding W

PDB-8iwx:
Cryo-EM structure of unprotonated LHCII in detergent solution at high pH value
Method: single particle / : Ruan MX, Ding W

PDB-8iwy:
Cryo-EM structure of protonated LHCII in detergent solution at low pH value
Method: single particle / : Ruan MX, Ding W

PDB-8iwz:
Cryo-EM structure of unprotonated LHCII in detergent solution at low pH value
Method: single particle / : Ruan MX, Ding W

PDB-8ix0:
Cryo-EM structure of unprotonated LHCII nanodisc at high pH value
Method: single particle / : Ruan MX, Ding W

PDB-8ix1:
Cryo-EM structure of protonated LHCII nanodisc at low pH value
Method: single particle / : Ruan MX, Ding W

PDB-8ix2:
Cryo-EM structure of unprotonated LHCII nanodisc at low pH value
Method: single particle / : Ruan MX, Ding W

EMDB-33845:
Cryo-EM map of Rpd3S complex
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33846:
Cryo-EM map of Rpd3S:head-bridge-right arm
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33847:
Cryo-EM map of Rpd3S:bridge-left arm
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33848:
Cryo-EM map of Eaf3 CHD bound to H3K36me3 nucleosome
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33849:
Cryo-EM map of Rpd3S in loose-state Rpd3S-NCP complex
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33850:
Cryo-EM map of Rpd3S in close-state Rpd3S-NCP complex
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33851:
Cryo-EM map of Rpd3S complex bound to H3K36me3 nucleosome in close state
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-33852:
Cryo-EM msp of Rpd3S complex bound to H3K36me3 nucleosome in loose state
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

PDB-7yi0:
Cryo-EM structure of Rpd3S complex
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

PDB-7yi1:
Cryo-EM structure of Eaf3 CHD bound to H3K36me3 nucleosome
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

PDB-7yi2:
Cryo-EM structure of Rpd3S in loose-state Rpd3S-NCP complex
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

PDB-7yi3:
Cryo-EM structure of Rpd3S in close-state Rpd3S-NCP complex
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

PDB-7yi4:
Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

PDB-7yi5:
Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state
Method: single particle / : Li HT, Yan CY, Guan HP, Wang P

EMDB-28825:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

EMDB-28827:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

PDB-8f2r:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

PDB-8f2u:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

EMDB-28087:
CryoEM structure of GSDMB in complex with shigella IpaH7.8
Method: single particle / : Wang C, Ruan J

EMDB-28583:
CryoEM structure of GSDMB pore without transmembrane beta-barrel
Method: single particle / : Wang C, Ruan J

EMDB-28584:
CryoEM structure of the GSDMB pore
Method: single particle / : Wang C, Ruan J

PDB-8efp:
CryoEM structure of GSDMB in complex with shigella IpaH7.8
Method: single particle / : Wang C, Ruan J

PDB-8et1:
CryoEM structure of GSDMB pore without transmembrane beta-barrel
Method: single particle / : Wang C, Ruan J

PDB-8et2:
CryoEM structure of the GSDMB pore
Method: single particle / : Wang C, Ruan J

EMDB-28535:
Human PAC in nanodisc at pH 4.0 with PI(4,5)P2 diC8
Method: single particle / : Ruan Z, Lu W

EMDB-28964:
Human PAC in nanodisc at pH 4.0 with PI(4,5)P2 diC8
Method: single particle / : Ruan Z, Lu W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more